Index

A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z

A

A (HHGate attribute), [1], [2]
(HHGate2D attribute), [1], [2]
a (IzhikevichNrn attribute), [1], [2]
abs_refract (SpikeGen attribute), [1], [2]
absoluteAccuracy (MarkovGslSolver attribute), [1], [2]
accommodating (IzhikevichNrn attribute), [1], [2]
activation() (SynChan method), [1], [2]
Adaptor (built-in class), [1], [2]
addMsg() (Shell method), [1], [2]
addSpike() (Synapse method), [1], [2]
aDest() (IzhikevichNrn method), [1], [2]
adjacent (Msg attribute), [1], [2]
alpha (HHGate attribute), [1], [2]
(IzhikevichNrn attribute), [1], [2]
alphaParms (HHGate attribute), [1], [2]
alwaysDiffuse (CubeMesh attribute), [1], [2]
Annotator (built-in class), [1], [2]
anyValue (Arith attribute), [1], [2]
arg1() (Arith method), [1], [2]
(MathFunc method), [1], [2]
arg1Value (Arith attribute), [1], [2]
arg1x2() (Arith method), [1], [2]
arg2() (Arith method), [1], [2]
(MathFunc method), [1], [2]
arg3() (Arith method), [1], [2]
(MathFunc method), [1], [2]
arg4() (MathFunc method), [1], [2]
Arith (built-in class), [1], [2]
axial (CompartmentBase attribute), [1], [2]
axialOut (CompartmentBase attribute), [1], [2]

B

B (CaConc attribute), [1], [2]
(HHGate attribute), [1], [2]
(HHGate2D attribute), [1], [2]
b (IzhikevichNrn attribute), [1], [2]
B (ZombieCaConc attribute), [1], [2]
badStoichiometry (SteadyState attribute), [1], [2]
basal() (CaConc method), [1], [2]
(ZombieCaConc method), [1], [2]
baseClass (Cinfo attribute), [1], [2]
baseLevel (PulseGen attribute), [1], [2]
bDest() (IzhikevichNrn method), [1], [2]
beta (HHGate attribute), [1], [2]
(IzhikevichNrn attribute), [1], [2]
buffer (DifShell attribute), [1], [2]
bufferSize (PostMaster attribute), [1], [2]
bufferTime (IntFire attribute), [1], [2]
(SynChanBase attribute), [1], [2]
BufPool (built-in class), [1], [2]
buildDefaultMesh() (ChemCompt method), [1], [2]
buildNeuroMeshJunctions() (Dsolve method), [1], [2]

C

C, [1], [2]
c (IzhikevichNrn attribute), [1], [2]
C (RC attribute), [1], [2]
Ca (CaConc attribute), [1], [2]
(ZombieCaConc attribute), [1], [2]
Ca_base (CaConc attribute), [1], [2]
(ZombieCaConc attribute), [1], [2]
caAdvance (HSolve attribute), [1], [2]
CaBasal (CaConc attribute), [1], [2]
(ZombieCaConc attribute), [1], [2]
cable() (CompartmentBase method), [1], [2]
CaConc (built-in class), [1], [2]
caDiv (HSolve attribute), [1], [2]
caMax (HSolve attribute), [1], [2]
caMin (HSolve attribute), [1], [2]
cDest() (IzhikevichNrn method), [1], [2]
ceiling (CaConc attribute), [1], [2]
(ZombieCaConc attribute), [1], [2]
cell (NeuroMesh attribute), [1], [2]
cellPortion() (NeuroMesh method), [1], [2]
Ceq, [1], [2]
ChanBase (built-in class), [1], [2]
channel (ChanBase attribute), [1], [2]
(CompartmentBase attribute), [1], [2]
(IzhikevichNrn attribute), [1], [2]
(MarkovRateTable attribute), [1], [2]
(MarkovSolverBase attribute), [1], [2]
(SynChanBase attribute), [1], [2]
channel1 (GapJunction attribute), [1], [2]
channel1Out, [1], [2]
channel2, [1], [2]
channel2Out, [1], [2]
channelOut (ChanBase attribute), [1], [2]
(SynChanBase attribute), [1], [2]
ChemCompt (built-in class), [1], [2]
childOut (Neutral attribute), [1], [2]
children (Neutral attribute), [1], [2]
ci() (Nernst method), [1], [2]
Cin (Nernst attribute), [1], [2]
Cinfo (built-in class), [1], [2]
className (Neutral attribute), [1], [2]
clear() (SparseMsg method), [1], [2]
clearVec() (TableBase method), [1], [2]
Clock (built-in class), [1], [2]
clockControl (Clock attribute), [1], [2]
Cm (CompartmentBase attribute), [1], [2]
CMg (MgBlock attribute), [1], [2]
co() (Nernst method), [1], [2]
color (Annotator attribute), [1], [2]
columnIndex (Stoich attribute), [1], [2]
command (PIDController attribute), [1], [2]
(VClamp attribute), [1], [2]
commandIn() (PIDController method), [1], [2]
(VClamp method), [1], [2]
compareVec() (TableBase method), [1], [2]
compareXplot() (TableBase method), [1], [2]
Compartment (built-in class), [1], [2]
compartment (Dsolve attribute), [1], [2]
(Ksolve attribute), [1], [2]
(Stoich attribute), [1], [2]
CompartmentBase (built-in class), [1], [2]
conc (PoolBase attribute), [1], [2]
concen() (HHChannel method), [1], [2]
(HHChannel2D method), [1], [2]
(ZombieHHChannel method), [1], [2]
concen2() (HHChannel2D method), [1], [2]
concentrationOut, [1], [2]
concInit (PoolBase attribute), [1], [2]
concK1 (CplxEnzBase attribute), [1], [2]
concOut (CaConc attribute), [1], [2]
(ZombieCaConc attribute), [1], [2]
convergenceCriterion (SteadyState attribute), [1], [2]
Coordinates (MeshEntry attribute), [1], [2]
coords (CubeMesh attribute), [1], [2]
(CylMesh attribute), [1], [2]
copy() (Shell method), [1], [2]
count (PulseGen attribute), [1], [2]
Cout (Nernst attribute), [1], [2]
cplx (CplxEnzBase attribute), [1], [2]
cplxDest() (CplxEnzBase method), [1], [2]
CplxEnzBase (built-in class), [1], [2]
cplxOut (CplxEnzBase attribute), [1], [2]
create() (Shell method), [1], [2]
createGate() (HHChannel method), [1], [2]
(ZombieHHChannel method), [1], [2]
CubeMesh (built-in class), [1], [2]
current (VClamp attribute), [1], [2]
current() (CaConc method), [1], [2]
(ZombieCaConc method), [1], [2]
currentFraction() (CaConc method), [1], [2]
(ZombieCaConc method), [1], [2]
currentOut (VClamp attribute), [1], [2]
currentStep (Clock attribute), [1], [2]
currentTime (Clock attribute), [1], [2]
cylinder, [1], [2]
cylinderOut, [1], [2]
CylMesh (built-in class), [1], [2]

D

D, [1], [2]
d (IzhikevichNrn attribute), [1], [2]
dDest() (IzhikevichNrn method), [1], [2]
decrease() (CaConc method), [1], [2]
(ZombieCaConc method), [1], [2]
decrement() (Pool method), [1], [2]
delay (PulseGen attribute), [1], [2]
(Synapse attribute), [1], [2]
delayIn() (PulseGen method), [1], [2]
delete() (Shell method), [1], [2]
derivative, [1], [2], [3], [4], [5]
derivativeOut, [1], [2]
dest (Finfo attribute), [1], [2]
destFields (Neutral attribute), [1], [2]
destFieldsOnE1 (Msg attribute), [1], [2]
destFieldsOnE2 (Msg attribute), [1], [2]
DiagonalMsg (built-in class), [1], [2]
diameter, [1], [2]
(CompartmentBase attribute), [1], [2]
DiffAmp (built-in class), [1], [2]
diffConst (PoolBase attribute), [1], [2]
diffLength (CylMesh attribute), [1], [2]
(NeuroMesh attribute), [1], [2]
DiffusionArea (MeshEntry attribute), [1], [2]
DiffusionScaling (MeshEntry attribute), [1], [2]
DifShell (built-in class), [1], [2]
dimensions (MeshEntry attribute), [1], [2]
distal, [1], [2]
distalOut, [1], [2], [3], [4], [5], [6], [7], [8]
divs (HHGate attribute), [1], [2]
docs (Cinfo attribute), [1], [2]
(Finfo attribute), [1], [2]
doLoop (StimulusTable attribute), [1], [2]
Double (built-in class), [1], [2]
Dsolve (built-in class), [1], [2]
dsolve (Ksolve attribute), [1], [2]
(Stoich attribute), [1], [2]
dt (Clock attribute), [1], [2]
(HSolve attribute), [1], [2]
dts (Clock attribute), [1], [2]
dx (CubeMesh attribute), [1], [2]
(Interpol2D attribute), [1], [2]
dy (CubeMesh attribute), [1], [2]
(Interpol2D attribute), [1], [2]
dz (CubeMesh attribute), [1], [2]

E

E (Nernst attribute), [1], [2]
e1 (Msg attribute), [1], [2]
e2 (Msg attribute), [1], [2]
e_previous, [1], [2]
edgeTriggered (SpikeGen attribute), [1], [2]
eigenvalues (SteadyState attribute), [1], [2]
Ek (ChanBase attribute), [1], [2]
(SynChanBase attribute), [1], [2]
(ZombieHHChannel attribute), [1], [2]
Em (CompartmentBase attribute), [1], [2]
Enz (built-in class), [1], [2]
enz (CplxEnzBase attribute), [1], [2]
EnzBase (built-in class), [1], [2]
enzDest() (CplxEnzBase method), [1], [2]
(EnzBase method), [1], [2]
enzOut (CplxEnzBase attribute), [1], [2]
Eout (Nernst attribute), [1], [2]
epsAbs (Ksolve attribute), [1], [2]
epsRel (Ksolve attribute), [1], [2]
eqTauPump(), [1], [2]
error, [1], [2]
estimatedDt (Stoich attribute), [1], [2]
eventOut (TimeTable attribute), [1], [2]
expr, [1], [2]

F

fieldName (Finfo attribute), [1], [2]
filename (TimeTable attribute), [1], [2]
fInflux(), [1], [2]
Finfo (built-in class), [1], [2]
finished (Clock attribute), [1], [2]
firstDelay (PulseGen attribute), [1], [2]
firstLevel (PulseGen attribute), [1], [2]
firstWidth (PulseGen attribute), [1], [2]
floor (CaConc attribute), [1], [2]
(ZombieCaConc attribute), [1], [2]
fluxFromIn(), [1], [2]
fluxFromOut(), [1], [2]
fOutflux(), [1], [2]
Func (built-in class), [1], [2]
FuncBase (built-in class), [1], [2]
FuncPool (built-in class), [1], [2]
function (Arith attribute), [1], [2]
(MathFunc attribute), [1], [2]

G

gain, [1], [2]
(DiffAmp attribute), [1], [2]
(PIDController attribute), [1], [2]
gainDest() (PIDController method), [1], [2]
gainIn() (DiffAmp method), [1], [2]
gamma (IzhikevichNrn attribute), [1], [2]
GapJunction (built-in class), [1], [2]
Gbar (ChanBase attribute), [1], [2]
gbar (MarkovChannel attribute), [1], [2]
Gbar (SynChanBase attribute), [1], [2]
(ZombieHHChannel attribute), [1], [2]
geometryPolicy (NeuroMesh attribute), [1], [2]
getA() (HHGate method), [1], [2]
(HHGate2D method), [1], [2]
(IzhikevichNrn method), [1], [2]
getAbs_refract() (SpikeGen method), [1], [2]
getAbsoluteAccuracy() (MarkovGslSolver method), [1], [2]
getAccommodating() (IzhikevichNrn method), [1], [2]
getAdjacent() (Msg method), [1], [2]
getAlpha() (HHGate method), [1], [2]
(IzhikevichNrn method), [1], [2]
getAlphaParms() (HHGate method), [1], [2]
getAlwaysDiffuse() (CubeMesh method), [1], [2]
getAnyValue() (Arith method), [1], [2]
getArg1Value() (Arith method), [1], [2]
getB() (CaConc method), [1], [2]
(HHGate method), [1], [2]
(HHGate2D method), [1], [2]
(IzhikevichNrn method), [1], [2]
(ZombieCaConc method), [1], [2]
getBadStoichiometry() (SteadyState method), [1], [2]
getBaseClass() (Cinfo method), [1], [2]
getBaseLevel() (PulseGen method), [1], [2]
getBeta() (HHGate method), [1], [2]
(IzhikevichNrn method), [1], [2]
getBufferSize() (PostMaster method), [1], [2]
getBufferTime() (IntFire method), [1], [2]
(SynChanBase method), [1], [2]
getC(), [1], [2]
(IzhikevichNrn method), [1], [2]
(RC method), [1], [2]
getCa() (CaConc method), [1], [2]
(ZombieCaConc method), [1], [2]
getCa_base() (CaConc method), [1], [2]
(ZombieCaConc method), [1], [2]
getCaAdvance() (HSolve method), [1], [2]
getCaBasal() (CaConc method), [1], [2]
(ZombieCaConc method), [1], [2]
getCaDiv() (HSolve method), [1], [2]
getCaMax() (HSolve method), [1], [2]
getCaMin() (HSolve method), [1], [2]
getCeiling() (CaConc method), [1], [2]
(ZombieCaConc method), [1], [2]
getCell() (NeuroMesh method), [1], [2]
getCeq(), [1], [2]
getChildren() (Neutral method), [1], [2]
getCin() (Nernst method), [1], [2]
getClassName() (Neutral method), [1], [2]
getCm() (CompartmentBase method), [1], [2]
getCMg() (MgBlock method), [1], [2]
getColor() (Annotator method), [1], [2]
getColumnIndex() (Stoich method), [1], [2]
getCommand() (PIDController method), [1], [2]
(VClamp method), [1], [2]
getCompartment() (Dsolve method), [1], [2]
(Ksolve method), [1], [2]
(Stoich method), [1], [2]
getConc() (PoolBase method), [1], [2]
getConcInit() (PoolBase method), [1], [2]
getConcK1() (CplxEnzBase method), [1], [2]
getConvergenceCriterion() (SteadyState method), [1], [2]
getCoordinates() (MeshEntry method), [1], [2]
getCoords() (CubeMesh method), [1], [2]
(CylMesh method), [1], [2]
getCount() (PulseGen method), [1], [2]
getCout() (Nernst method), [1], [2]
getCurrent() (VClamp method), [1], [2]
getCurrentStep() (Clock method), [1], [2]
getCurrentTime() (Clock method), [1], [2]
getD(), [1], [2]
(IzhikevichNrn method), [1], [2]
getDelay() (PulseGen method), [1], [2]
(Synapse method), [1], [2]
getDerivative() (Func method), [1], [2]
(PIDController method), [1], [2]
getDest() (Finfo method), [1], [2]
getDestFields() (Neutral method), [1], [2]
getDestFieldsOnE1() (Msg method), [1], [2]
getDestFieldsOnE2() (Msg method), [1], [2]
getDiameter(), [1], [2]
(CompartmentBase method), [1], [2]
getDiffConst() (PoolBase method), [1], [2]
getDiffLength() (CylMesh method), [1], [2]
(NeuroMesh method), [1], [2]
getDiffusionArea() (MeshEntry method), [1], [2]
getDiffusionScaling() (MeshEntry method), [1], [2]
getDimensions() (MeshEntry method), [1], [2]
getDivs() (HHGate method), [1], [2]
getDocs() (Cinfo method), [1], [2]
(Finfo method), [1], [2]
getDoLoop() (StimulusTable method), [1], [2]
getDsolve() (Ksolve method), [1], [2]
(Stoich method), [1], [2]
getDt() (Clock method), [1], [2]
(HSolve method), [1], [2]
getDts() (Clock method), [1], [2]
getDx() (CubeMesh method), [1], [2]
(Interpol2D method), [1], [2]
getDy() (CubeMesh method), [1], [2]
(Interpol2D method), [1], [2]
getDz() (CubeMesh method), [1], [2]
getE() (Nernst method), [1], [2]
getE1() (Msg method), [1], [2]
getE2() (Msg method), [1], [2]
getE_previous() (PIDController method), [1], [2]
getEdgeTriggered() (SpikeGen method), [1], [2]
getEigenvalues() (SteadyState method), [1], [2]
getEk() (ChanBase method), [1], [2]
(SynChanBase method), [1], [2]
(ZombieHHChannel method), [1], [2]
getEm() (CompartmentBase method), [1], [2]
getEpsAbs() (Ksolve method), [1], [2]
getEpsRel() (Ksolve method), [1], [2]
getError() (PIDController method), [1], [2]
getEstimatedDt() (Stoich method), [1], [2]
getExpr() (Func method), [1], [2]
getFieldName() (Finfo method), [1], [2]
getFilename() (TimeTable method), [1], [2]
getFirstDelay() (PulseGen method), [1], [2]
getFirstLevel() (PulseGen method), [1], [2]
getFirstWidth() (PulseGen method), [1], [2]
getFloor() (CaConc method), [1], [2]
(ZombieCaConc method), [1], [2]
getFunction() (Arith method), [1], [2]
(MathFunc method), [1], [2]
getGain() (DiffAmp method), [1], [2]
(PIDController method), [1], [2]
(VClamp method), [1], [2]
getGamma() (IzhikevichNrn method), [1], [2]
getGbar() (ChanBase method), [1], [2]
(MarkovChannel method), [1], [2]
(SynChanBase method), [1], [2]
(ZombieHHChannel method), [1], [2]
getGeometryPolicy() (NeuroMesh method), [1], [2]
getGk(), [1], [2]
(ChanBase method), [1], [2]
(SynChanBase method), [1], [2]
(ZombieHHChannel method), [1], [2]
getHasFired() (SpikeGen method), [1], [2]
getI1() (OneToAllMsg method), [1], [2]
(SingleMsg method), [1], [2]
getI2() (SingleMsg method), [1], [2]
getIcon() (Annotator method), [1], [2]
getIk() (ChanBase method), [1], [2]
(MgBlock method), [1], [2]
(SynChanBase method), [1], [2]
(ZombieHHChannel method), [1], [2]
getIm() (CompartmentBase method), [1], [2]
(IzhikevichNrn method), [1], [2]
getInitialState() (MarkovChannel method), [1], [2]
(MarkovSolverBase method), [1], [2]
getInitU() (IzhikevichNrn method), [1], [2]
getInitVm() (CompartmentBase method), [1], [2]
(IzhikevichNrn method), [1], [2]
getInject() (CompartmentBase method), [1], [2]
(IzhikevichNrn method), [1], [2]
(RC method), [1], [2]
getInnerArea(), [1], [2]
getInputOffset() (Adaptor method), [1], [2]
getInstant() (HHChannel method), [1], [2]
(HHChannel2D method), [1], [2]
(ZombieHHChannel method), [1], [2]
getIntegral() (PIDController method), [1], [2]
getInternalDt() (MarkovGslSolver method), [1], [2]
getInvdx() (MarkovSolverBase method), [1], [2]
(VectorTable method), [1], [2]
getInvdy() (MarkovSolverBase method), [1], [2]
getIsInitialized() (MarkovGslSolver method), [1], [2]
(SteadyState method), [1], [2]
getIsRunning() (Clock method), [1], [2]
getIsToroid() (CubeMesh method), [1], [2]
getK1() (CplxEnzBase method), [1], [2]
getK2() (CplxEnzBase method), [1], [2]
getK3() (CplxEnzBase method), [1], [2]
getKb() (ReacBase method), [1], [2]
getKcat() (EnzBase method), [1], [2]
getKf() (ReacBase method), [1], [2]
getKm() (EnzBase method), [1], [2]
getKMg_A() (MgBlock method), [1], [2]
getKMg_B() (MgBlock method), [1], [2]
getKsolve() (Stoich method), [1], [2]
getLabels() (MarkovChannel method), [1], [2]
getLeak(), [1], [2]
getLength(), [1], [2]
(CompartmentBase method), [1], [2]
getLevel() (PulseGen method), [1], [2]
getLigandConc() (MarkovChannel method), [1], [2]
(MarkovRateTable method), [1], [2]
getLookupindex() (VectorTable method), [1], [2]
getLookupvalue() (VectorTable method), [1], [2]
getLoopTime() (StimulusTable method), [1], [2]
getMathML() (MathFunc method), [1], [2]
getMatrixEntry() (Stoich method), [1], [2]
getMax() (HHGate method), [1], [2]
getMaxIter() (SteadyState method), [1], [2]
getMe() (Neutral method), [1], [2]
getMean() (Stats method), [1], [2]
getMeshToSpace() (CubeMesh method), [1], [2]
getMeshType() (MeshEntry method), [1], [2]
getMethod() (Ksolve method), [1], [2]
(MarkovGslSolver method), [1], [2]
(TimeTable method), [1], [2]
getMin() (HHGate method), [1], [2]
getMInfinity() (HHGate method), [1], [2]
getMode() (Func method), [1], [2]
(VClamp method), [1], [2]
getMolWt() (Species method), [1], [2]
getMotorConst() (PoolBase method), [1], [2]
getMsgDestFunctions() (Neutral method), [1], [2]
getMsgDests() (Neutral method), [1], [2]
getMsgIn() (Neutral method), [1], [2]
getMsgOut() (Neutral method), [1], [2]
getMyNode() (PostMaster method), [1], [2]
getN() (PoolBase method), [1], [2]
getName() (Neutral method), [1], [2]
getNeighbors() (MeshEntry method), [1], [2]
(Neutral method), [1], [2]
getNInit() (PoolBase method), [1], [2]
getNIter() (SteadyState method), [1], [2]
getNNegEigenvalues() (SteadyState method), [1], [2]
getNormalizeWeights() (SynChan method), [1], [2]
getNotes() (Annotator method), [1], [2]
getNPosEigenvalues() (SteadyState method), [1], [2]
getNsteps() (Clock method), [1], [2]
getNum() (Stats method), [1], [2]
getNumAllPools() (Stoich method), [1], [2]
getNumAllVoxels() (Dsolve method), [1], [2]
(Gsolve method), [1], [2]
(Ksolve method), [1], [2]
getNumColumns() (SparseMsg method), [1], [2]
getNumData() (Neutral method), [1], [2]
getNumDiffCompts() (CylMesh method), [1], [2]
(NeuroMesh method), [1], [2]
getNumDimensions() (ChemCompt method), [1], [2]
getNumEntries() (SparseMsg method), [1], [2]
getNumField() (Neutral method), [1], [2]
getNumGateX() (HHChannel method), [1], [2]
(HHChannel2D method), [1], [2]
(ZombieHHChannel method), [1], [2]
getNumGateY() (HHChannel method), [1], [2]
(HHChannel2D method), [1], [2]
(ZombieHHChannel method), [1], [2]
getNumGateZ() (HHChannel method), [1], [2]
(HHChannel2D method), [1], [2]
(ZombieHHChannel method), [1], [2]
getNumKb() (ReacBase method), [1], [2]
getNumKf() (ReacBase method), [1], [2]
getNumKm() (EnzBase method), [1], [2]
getNumLocalVoxels() (Gsolve method), [1], [2]
(Ksolve method), [1], [2]
getNumMesh() (ChemCompt method), [1], [2]
getNumNodes() (PostMaster method), [1], [2]
getNumOpenStates() (MarkovChannel method), [1], [2]
getNumPools() (Dsolve method), [1], [2]
(Gsolve method), [1], [2]
(Ksolve method), [1], [2]
getNumProducts() (ReacBase method), [1], [2]
getNumRates() (Stoich method), [1], [2]
getNumRows() (SparseMsg method), [1], [2]
getNumSegments() (NeuroMesh method), [1], [2]
getNumStates() (MarkovChannel method), [1], [2]
getNumSubstrates() (EnzBase method), [1], [2]
(ReacBase method), [1], [2]
getNumSynapse() (SynHandler method), [1], [2]
getNumSynapses() (SynHandler method), [1], [2]
getNumTicks() (Clock method), [1], [2]
getNumVarPools() (SteadyState method), [1], [2]
(Stoich method), [1], [2]
getNumVoxels() (Dsolve method), [1], [2]
getNVec() (Dsolve method), [1], [2]
(Gsolve method), [1], [2]
(Ksolve method), [1], [2]
getNx() (CubeMesh method), [1], [2]
getNy() (CubeMesh method), [1], [2]
getNz() (CubeMesh method), [1], [2]
getOneVoxelVolume() (ChemCompt method), [1], [2]
getOuterArea(), [1], [2]
getOutputOffset() (Adaptor method), [1], [2]
getOutputValue() (Adaptor method), [1], [2]
(Arith method), [1], [2]
(DiffAmp method), [1], [2]
(PIDController method), [1], [2]
(PulseGen method), [1], [2]
(TableBase method), [1], [2]
getParent() (Neutral method), [1], [2]
getParentVoxel() (NeuroMesh method), [1], [2]
(SpineMesh method), [1], [2]
getPath() (Dsolve method), [1], [2]
(Neutral method), [1], [2]
(Stoich method), [1], [2]
getPoolIdMap() (Stoich method), [1], [2]
getPreserveNumEntries() (CubeMesh method), [1], [2]
getProbability() (SparseMsg method), [1], [2]
getQ() (MarkovRateTable method), [1], [2]
(MarkovSolverBase method), [1], [2]
getR() (RC method), [1], [2]
getR0() (CylMesh method), [1], [2]
getR1() (CylMesh method), [1], [2]
getRa() (CompartmentBase method), [1], [2]
getRank() (SteadyState method), [1], [2]
getRatio() (CplxEnzBase method), [1], [2]
getRefractoryPeriod() (IntFire method), [1], [2]
getRefractT() (SpikeGen method), [1], [2]
getRelativeAccuracy() (MarkovGslSolver method), [1], [2]
getResult() (FuncBase method), [1], [2]
(MathFunc method), [1], [2]
getRm() (CompartmentBase method), [1], [2]
getRmByTau() (IzhikevichNrn method), [1], [2]
getRowStart() (Stoich method), [1], [2]
getRunTime() (Clock method), [1], [2]
getSaturation() (DiffAmp method), [1], [2]
(PIDController method), [1], [2]
getScale() (Adaptor method), [1], [2]
(Nernst method), [1], [2]
getSdev() (Stats method), [1], [2]
getSecondDelay() (PulseGen method), [1], [2]
getSecondLevel() (PulseGen method), [1], [2]
getSecondWidth() (PulseGen method), [1], [2]
getSeed() (HSolve method), [1], [2]
(SparseMsg method), [1], [2]
getSensed() (PIDController method), [1], [2]
(VClamp method), [1], [2]
getSeparateSpines() (NeuroMesh method), [1], [2]
getShapeMode(), [1], [2]
getSize() (MarkovRateTable method), [1], [2]
(TableBase method), [1], [2]
getSolutionStatus() (SteadyState method), [1], [2]
getSourceFields() (Neutral method), [1], [2]
getSpaceToMesh() (CubeMesh method), [1], [2]
getSpeciesId() (PoolBase method), [1], [2]
getSrc() (Finfo method), [1], [2]
getSrcFieldsOnE1() (Msg method), [1], [2]
getSrcFieldsOnE2() (Msg method), [1], [2]
getStartTime() (StimulusTable method), [1], [2]
getState() (MarkovChannel method), [1], [2]
(MarkovSolverBase method), [1], [2]
(RC method), [1], [2]
(TimeTable method), [1], [2]
getStateType() (SteadyState method), [1], [2]
getStatus() (SteadyState method), [1], [2]
getStencilIndex() (ChemCompt method), [1], [2]
getStencilRate() (ChemCompt method), [1], [2]
getStepPosition() (StimulusTable method), [1], [2]
getStepSize() (StimulusTable method), [1], [2]
getStoich() (Dsolve method), [1], [2]
(Gsolve method), [1], [2]
(Ksolve method), [1], [2]
(SteadyState method), [1], [2]
getStopTime() (StimulusTable method), [1], [2]
getStride() (DiagonalMsg method), [1], [2]
getSubTree() (NeuroMesh method), [1], [2]
getSum() (Stats method), [1], [2]
getSurface() (CubeMesh method), [1], [2]
getTable() (Interpol2D method), [1], [2]
(VectorTable method), [1], [2]
getTableA() (HHGate method), [1], [2]
(HHGate2D method), [1], [2]
getTableB() (HHGate method), [1], [2]
(HHGate2D method), [1], [2]
getTableVector2D() (Interpol2D method), [1], [2]
getTarget() (HSolve method), [1], [2]
getTau() (CaConc method), [1], [2]
(HHGate method), [1], [2]
(IntFire method), [1], [2]
(VClamp method), [1], [2]
(ZombieCaConc method), [1], [2]
getTau1() (SynChan method), [1], [2]
getTau2() (SynChan method), [1], [2]
getTauD() (PIDController method), [1], [2]
getTauI() (PIDController method), [1], [2]
getTd() (VClamp method), [1], [2]
getTemperature() (Nernst method), [1], [2]
getTextColor() (Annotator method), [1], [2]
getThick() (CaConc method), [1], [2]
(ZombieCaConc method), [1], [2]
getThickness(), [1], [2]
(PsdMesh method), [1], [2]
getThis() (Mstring method), [1], [2]
(Neutral method), [1], [2]
getThresh() (IntFire method), [1], [2]
getThreshold() (SpikeGen method), [1], [2]
(Table method), [1], [2]
getTi() (VClamp method), [1], [2]
getTickDt() (Clock method), [1], [2]
getTickStep() (Clock method), [1], [2]
getTotal() (SteadyState method), [1], [2]
getTotLength() (CylMesh method), [1], [2]
getTrigMode() (PulseGen method), [1], [2]
getType() (Finfo method), [1], [2]
getU() (IzhikevichNrn method), [1], [2]
getU0() (IzhikevichNrn method), [1], [2]
getUseConcentration() (HHChannel method), [1], [2]
(ZombieHHChannel method), [1], [2]
getUseInterpolation() (HHGate method), [1], [2]
getUseRandInit() (Gsolve method), [1], [2]
getV0() (RC method), [1], [2]
getValence(), [1], [2]
(Nernst method), [1], [2]
getValue() (Double method), [1], [2]
(Func method), [1], [2]
(Long method), [1], [2]
(Mstring method), [1], [2]
(Unsigned method), [1], [2]
getValueFields() (Neutral method), [1], [2]
getVar() (Func method), [1], [2]
getVars() (Func method), [1], [2]
getVDiv() (HSolve method), [1], [2]
getVector() (TableBase method), [1], [2]
getVm() (CompartmentBase method), [1], [2]
(IntFire method), [1], [2]
(IzhikevichNrn method), [1], [2]
(MarkovChannel method), [1], [2]
(MarkovRateTable method), [1], [2]
getVMax() (HSolve method), [1], [2]
getVmax() (IzhikevichNrn method), [1], [2]
getVMin() (HSolve method), [1], [2]
getVolume(), [1], [2]
(ChemCompt method), [1], [2]
(MeshEntry method), [1], [2], [3], [4], [5]
(PoolBase method), [1], [2]
getVoxelVolume() (ChemCompt method), [1], [2]
getWeight() (Synapse method), [1], [2]
getWidth() (PulseGen method), [1], [2]
getX() (Annotator method), [1], [2]
(CompartmentBase method), [1], [2]
(Func method), [1], [2]
(HHChannel method), [1], [2]
(HHChannel2D method), [1], [2]
(ZombieHHChannel method), [1], [2]
getX0() (CompartmentBase method), [1], [2]
(CubeMesh method), [1], [2]
(CylMesh method), [1], [2]
getX1() (CubeMesh method), [1], [2]
(CylMesh method), [1], [2]
getXdivs() (Interpol2D method), [1], [2]
(MarkovSolverBase method), [1], [2]
(VectorTable method), [1], [2]
getXdivsA() (HHGate2D method), [1], [2]
getXdivsB() (HHGate2D method), [1], [2]
getXindex() (HHChannel2D method), [1], [2]
getXmax() (Interpol method), [1], [2]
(Interpol2D method), [1], [2]
(MarkovSolverBase method), [1], [2]
(VectorTable method), [1], [2]
getXmaxA() (HHGate2D method), [1], [2]
getXmaxB() (HHGate2D method), [1], [2]
getXmin() (Interpol method), [1], [2]
(Interpol2D method), [1], [2]
(MarkovSolverBase method), [1], [2]
(VectorTable method), [1], [2]
getXminA() (HHGate2D method), [1], [2]
getXminB() (HHGate2D method), [1], [2]
getXpower() (HHChannel method), [1], [2]
(HHChannel2D method), [1], [2]
(ZombieHHChannel method), [1], [2]
getY() (Annotator method), [1], [2]
(CompartmentBase method), [1], [2]
(Func method), [1], [2]
(HHChannel method), [1], [2]
(HHChannel2D method), [1], [2]
(Interpol method), [1], [2]
(TableBase method), [1], [2]
(ZombieHHChannel method), [1], [2]
getY0() (CompartmentBase method), [1], [2]
(CubeMesh method), [1], [2]
(CylMesh method), [1], [2]
getY1() (CubeMesh method), [1], [2]
(CylMesh method), [1], [2]
getYdivs() (Interpol2D method), [1], [2]
(MarkovSolverBase method), [1], [2]
getYdivsA() (HHGate2D method), [1], [2]
getYdivsB() (HHGate2D method), [1], [2]
getYindex() (HHChannel2D method), [1], [2]
getYmax() (Interpol2D method), [1], [2]
(MarkovSolverBase method), [1], [2]
getYmaxA() (HHGate2D method), [1], [2]
getYmaxB() (HHGate2D method), [1], [2]
getYmin() (Interpol2D method), [1], [2]
(MarkovSolverBase method), [1], [2]
getYminA() (HHGate2D method), [1], [2]
getYminB() (HHGate2D method), [1], [2]
getYpower() (HHChannel method), [1], [2]
(HHChannel2D method), [1], [2]
(ZombieHHChannel method), [1], [2]
getZ() (Annotator method), [1], [2]
(CompartmentBase method), [1], [2]
(Func method), [1], [2]
(HHChannel method), [1], [2]
(HHChannel2D method), [1], [2]
(Interpol2D method), [1], [2]
(ZombieHHChannel method), [1], [2]
getZ0() (CompartmentBase method), [1], [2]
(CubeMesh method), [1], [2]
(CylMesh method), [1], [2]
getZ1() (CubeMesh method), [1], [2]
(CylMesh method), [1], [2]
getZindex() (HHChannel2D method), [1], [2]
getZk() (MgBlock method), [1], [2]
getZpower() (HHChannel method), [1], [2]
(HHChannel2D method), [1], [2]
(ZombieHHChannel method), [1], [2]
ghk (ChanBase attribute), [1], [2]
(SynChanBase attribute), [1], [2]
Gk, [1], [2]
(ChanBase attribute), [1], [2]
(SynChanBase attribute), [1], [2]
(ZombieHHChannel attribute), [1], [2]
Group (built-in class), [1], [2]
group (Group attribute), [1], [2]
Gsolve (built-in class), [1], [2]

H

handleAxial() (CompartmentBase method), [1], [2]
handleChannel() (CompartmentBase method), [1], [2]
(IzhikevichNrn method), [1], [2]
handleLigandConc() (MarkovChannel method), [1], [2]
(MarkovRateTable method), [1], [2]
handleMolWt() (PoolBase method), [1], [2]
handleMolWtRequest() (Species method), [1], [2]
handleQ() (MarkovGslSolver method), [1], [2]
handleRaxial() (CompartmentBase method), [1], [2]
handleState() (MarkovChannel method), [1], [2]
handleVm() (MarkovRateTable method), [1], [2]
(MarkovSolverBase method), [1], [2]
hasFired (SpikeGen attribute), [1], [2]
HHChannel (built-in class), [1], [2]
HHChannel2D (built-in class), [1], [2]
HHGate (built-in class), [1], [2]
HHGate2D (built-in class), [1], [2]
hillPump(), [1], [2]
HSolve (built-in class), [1], [2]

I

i1 (OneToAllMsg attribute), [1], [2]
(SingleMsg attribute), [1], [2]
i2 (SingleMsg attribute), [1], [2]
icon (Annotator attribute), [1], [2]
Ik (ChanBase attribute), [1], [2]
(MgBlock attribute), [1], [2]
(SynChanBase attribute), [1], [2]
(ZombieHHChannel attribute), [1], [2]
IkOut (ChanBase attribute), [1], [2]
(SynChanBase attribute), [1], [2]
Im (CompartmentBase attribute), [1], [2]
(IzhikevichNrn attribute), [1], [2]
increase() (CaConc method), [1], [2]
(ZombieCaConc method), [1], [2]
increment() (Pool method), [1], [2]
influx(), [1], [2]
init (CompartmentBase attribute), [1], [2]
init() (MarkovGslSolver method), [1], [2]
(MarkovRateTable method), [1], [2]
(MarkovSolverBase method), [1], [2]
initialState (MarkovChannel attribute), [1], [2]
(MarkovSolverBase attribute), [1], [2]
initProc() (CompartmentBase method), [1], [2]
initReinit() (CompartmentBase method), [1], [2]
initU (IzhikevichNrn attribute), [1], [2]
initVm (CompartmentBase attribute), [1], [2]
(IzhikevichNrn attribute), [1], [2]
inject (CompartmentBase attribute), [1], [2]
(IzhikevichNrn attribute), [1], [2]
(RC attribute), [1], [2]
injectIn() (RC method), [1], [2]
injectMsg() (CompartmentBase method), [1], [2], [3], [4], [5]
(IzhikevichNrn method), [1], [2]
innerArea, [1], [2]
innerDif, [1], [2]
innerDifSourceOut, [1], [2]
input() (Adaptor method), [1], [2]
(FuncBase method), [1], [2]
(FuncPool method), [1], [2]
(Interpol method), [1], [2]
(PulseGen method), [1], [2]
(Table method), [1], [2]
(ZombieFuncPool method), [1], [2]
inputOffset (Adaptor attribute), [1], [2]
instant (HHChannel attribute), [1], [2]
(HHChannel2D attribute), [1], [2]
(ZombieHHChannel attribute), [1], [2]
instratesOut (MarkovRateTable attribute), [1], [2]
integral, [1], [2]
internalDt (MarkovGslSolver attribute), [1], [2]
Interpol (built-in class), [1], [2]
Interpol2D (built-in class), [1], [2]
IntFire (built-in class), [1], [2]
invdx (MarkovSolverBase attribute), [1], [2]
(VectorTable attribute), [1], [2]
invdy (MarkovSolverBase attribute), [1], [2]
isInitialized (MarkovGslSolver attribute), [1], [2]
(SteadyState attribute), [1], [2]
isRunning (Clock attribute), [1], [2]
isToroid (CubeMesh attribute), [1], [2]
IzhikevichNrn (built-in class), [1], [2]

K

k1 (CplxEnzBase attribute), [1], [2]
k2 (CplxEnzBase attribute), [1], [2]
k3 (CplxEnzBase attribute), [1], [2]
Kb (ReacBase attribute), [1], [2]
kcat (EnzBase attribute), [1], [2]
Kf (ReacBase attribute), [1], [2]
Km (EnzBase attribute), [1], [2]
KMg_A (MgBlock attribute), [1], [2]
KMg_B (MgBlock attribute), [1], [2]
Ksolve (built-in class), [1], [2]
ksolve (Stoich attribute), [1], [2]

L

labels (MarkovChannel attribute), [1], [2]
leak, [1], [2]
Leakage (built-in class), [1], [2]
length, [1], [2]
(CompartmentBase attribute), [1], [2]
level (PulseGen attribute), [1], [2]
levelIn() (PulseGen method), [1], [2]
ligandConc (MarkovChannel attribute), [1], [2]
(MarkovRateTable attribute), [1], [2]
ligandConc() (MarkovSolverBase method), [1], [2]
linearTransform() (TableBase method), [1], [2]
loadCSV() (TableBase method), [1], [2]
loadXplot() (TableBase method), [1], [2]
loadXplotRange() (TableBase method), [1], [2]
Long (built-in class), [1], [2]
lookup() (Interpol2D method), [1], [2]
lookupindex (VectorTable attribute), [1], [2]
lookupOut (Interpol attribute), [1], [2]
(Interpol2D attribute), [1], [2]
lookupReturn2D (Interpol2D attribute), [1], [2]
lookupvalue (VectorTable attribute), [1], [2]
loopTime (StimulusTable attribute), [1], [2]

M

MarkovChannel (built-in class), [1], [2]
MarkovGslSolver (built-in class), [1], [2]
MarkovRateTable (built-in class), [1], [2]
MarkovSolver (built-in class), [1], [2]
MarkovSolverBase (built-in class), [1], [2]
MathFunc (built-in class), [1], [2]
mathML (MathFunc attribute), [1], [2]
matrixEntry (Stoich attribute), [1], [2]
max (HHGate attribute), [1], [2]
maxIter (SteadyState attribute), [1], [2]
me (Neutral attribute), [1], [2]
mean (Stats attribute), [1], [2]
mesh (MeshEntry attribute), [1], [2]
MeshEntry (built-in class), [1], [2]
meshToSpace (CubeMesh attribute), [1], [2]
meshType (MeshEntry attribute), [1], [2]
method, [1], [2]
(Ksolve attribute), [1], [2]
(MarkovGslSolver attribute), [1], [2]
MgBlock (built-in class), [1], [2]
min (HHGate attribute), [1], [2]
mInfinity (HHGate attribute), [1], [2]
minusIn() (DiffAmp method), [1], [2]
MMenz (built-in class), [1], [2]
mmPump(), [1], [2]
mode, [1], [2]
(VClamp attribute), [1], [2]
modulator() (SynChan method), [1], [2]
molWt (Species attribute), [1], [2]
molWtOut (Species attribute), [1], [2]
motorConst (PoolBase attribute), [1], [2]
move() (Shell method), [1], [2]
Msg (built-in class), [1], [2]
msgDestFunctions (Neutral attribute), [1], [2]
msgDests (Neutral attribute), [1], [2]
msgIn (Neutral attribute), [1], [2]
msgOut (Neutral attribute), [1], [2]
Mstring (built-in class), [1], [2]
myNode (PostMaster attribute), [1], [2]

N

n (PoolBase attribute), [1], [2]
name (Neutral attribute), [1], [2]
neighbors (MeshEntry attribute), [1], [2]
(Neutral attribute), [1], [2]
Nernst (built-in class), [1], [2]
NeuroMesh (built-in class), [1], [2]
Neuron (built-in class), [1], [2]
Neutral (built-in class), [1], [2]
nInit (PoolBase attribute), [1], [2]
nIter (SteadyState attribute), [1], [2]
nNegEigenvalues (SteadyState attribute), [1], [2]
normalizeWeights (SynChan attribute), [1], [2]
notes (Annotator attribute), [1], [2]
nOut (PoolBase attribute), [1], [2]
nPosEigenvalues (SteadyState attribute), [1], [2]
nsteps (Clock attribute), [1], [2]
num (Stats attribute), [1], [2]
numAllPools (Stoich attribute), [1], [2]
numAllVoxels (Dsolve attribute), [1], [2]
(Gsolve attribute), [1], [2]
(Ksolve attribute), [1], [2]
numColumns (SparseMsg attribute), [1], [2]
numData (Neutral attribute), [1], [2]
numDiffCompts (CylMesh attribute), [1], [2]
(NeuroMesh attribute), [1], [2]
numDimensions (ChemCompt attribute), [1], [2]
numEntries (SparseMsg attribute), [1], [2]
numField (Neutral attribute), [1], [2]
numKb (ReacBase attribute), [1], [2]
numKf (ReacBase attribute), [1], [2]
numKm (EnzBase attribute), [1], [2]
numLocalVoxels (Gsolve attribute), [1], [2]
(Ksolve attribute), [1], [2]
numNodes (PostMaster attribute), [1], [2]
numOpenStates (MarkovChannel attribute), [1], [2]
numPools (Dsolve attribute), [1], [2]
(Gsolve attribute), [1], [2]
(Ksolve attribute), [1], [2]
numProducts (ReacBase attribute), [1], [2]
numRates (Stoich attribute), [1], [2]
numRows (SparseMsg attribute), [1], [2]
numSegments (NeuroMesh attribute), [1], [2]
numStates (MarkovChannel attribute), [1], [2]
numSubstrates (EnzBase attribute), [1], [2]
(ReacBase attribute), [1], [2]
numSynapses (SynHandler attribute), [1], [2]
numTicks (Clock attribute), [1], [2]
numVarPools (SteadyState attribute), [1], [2]
(Stoich attribute), [1], [2]
numVoxels (Dsolve attribute), [1], [2]
nVec (Dsolve attribute), [1], [2]
(Gsolve attribute), [1], [2]
(Ksolve attribute), [1], [2]
nx (CubeMesh attribute), [1], [2]
ny (CubeMesh attribute), [1], [2]
nz (CubeMesh attribute), [1], [2]

O

OneToAllMsg (built-in class), [1], [2]
OneToOneDataIndexMsg (built-in class), [1], [2]
OneToOneMsg (built-in class), [1], [2]
oneVoxelVolume (ChemCompt attribute), [1], [2]
origChannel() (MgBlock method), [1], [2]
outerArea, [1], [2]
outerDif, [1], [2]
outerDifSourceOut, [1], [2]
outflux(), [1], [2]
output (Adaptor attribute), [1], [2]
(Arith attribute), [1], [2]
(DiffAmp attribute), [1], [2]
(FuncBase attribute), [1], [2]
(MathFunc attribute), [1], [2]
(PIDController attribute), [1], [2]
(PulseGen attribute), [1], [2]
(RC attribute), [1], [2]
(StimulusTable attribute), [1], [2]
outputOffset (Adaptor attribute), [1], [2]
outputValue (Adaptor attribute), [1], [2]
(Arith attribute), [1], [2]
(DiffAmp attribute), [1], [2]
(PIDController attribute), [1], [2]
(PulseGen attribute), [1], [2]
(TableBase attribute), [1], [2]

P

pairFill() (SparseMsg method), [1], [2]
parent (Neutral attribute), [1], [2]
parentMsg() (Neutral method), [1], [2]
parentVoxel (NeuroMesh attribute), [1], [2]
(SpineMesh attribute), [1], [2]
path (Dsolve attribute), [1], [2]
(Neutral attribute), [1], [2]
(Stoich attribute), [1], [2]
permeabilityOut (ChanBase attribute), [1], [2]
(SynChanBase attribute), [1], [2]
PIDController (built-in class), [1], [2]
plainPlot() (TableBase method), [1], [2]
plusIn() (DiffAmp method), [1], [2]
Pool (built-in class), [1], [2]
pool (Species attribute), [1], [2]
PoolBase (built-in class), [1], [2]
poolIdMap (Stoich attribute), [1], [2]
PostMaster (built-in class), [1], [2]
prd (EnzBase attribute), [1], [2]
(ReacBase attribute), [1], [2]
prdDest() (EnzBase method), [1], [2]
(ReacBase method), [1], [2]
prdOut (EnzBase attribute), [1], [2]
(ReacBase attribute), [1], [2]
preserveNumEntries (CubeMesh attribute), [1], [2]
probability (SparseMsg attribute), [1], [2]
proc, [1], [2]
(Adaptor attribute), [1], [2]
(Arith attribute), [1], [2]
(BufPool attribute), [1], [2]
(CaConc attribute), [1], [2]
(CompartmentBase attribute), [1], [2]
(DiffAmp attribute), [1], [2]
(Dsolve attribute), [1], [2]
(EnzBase attribute), [1], [2]
(Func attribute), [1], [2]
(FuncBase attribute), [1], [2]
(Gsolve attribute), [1], [2]
(HHChannel attribute), [1], [2]
(HHChannel2D attribute), [1], [2]
(HSolve attribute), [1], [2]
(IntFire attribute), [1], [2]
(Interpol attribute), [1], [2]
(IzhikevichNrn attribute), [1], [2]
(Ksolve attribute), [1], [2]
(Leakage attribute), [1], [2]
(MarkovChannel attribute), [1], [2]
(MarkovGslSolver attribute), [1], [2]
(MarkovRateTable attribute), [1], [2]
(MarkovSolver attribute), [1], [2]
(MarkovSolverBase attribute), [1], [2]
(MathFunc attribute), [1], [2]
(MeshEntry attribute), [1], [2]
(MgBlock attribute), [1], [2]
(PIDController attribute), [1], [2]
(PoolBase attribute), [1], [2]
(PostMaster attribute), [1], [2]
(PulseGen attribute), [1], [2]
(RC attribute), [1], [2]
(ReacBase attribute), [1], [2]
(SpikeGen attribute), [1], [2]
(Stats attribute), [1], [2]
(StimulusTable attribute), [1], [2]
(SynChan attribute), [1], [2]
(Table attribute), [1], [2]
(TimeTable attribute), [1], [2]
(VClamp attribute), [1], [2]
(ZombieCaConc attribute), [1], [2]
(ZombieHHChannel attribute), [1], [2]
proc0 (Clock attribute), [1], [2]
proc1 (Clock attribute), [1], [2]
proc2 (Clock attribute), [1], [2]
proc3 (Clock attribute), [1], [2]
proc4 (Clock attribute), [1], [2]
proc5 (Clock attribute), [1], [2]
proc6 (Clock attribute), [1], [2]
proc7 (Clock attribute), [1], [2]
proc8 (Clock attribute), [1], [2]
proc9 (Clock attribute), [1], [2]
process(), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14]
(Adaptor method), [1], [2]
(Arith method), [1], [2]
(BufPool method), [1], [2]
(CaConc method), [1], [2]
(CompartmentBase method), [1], [2]
(DiffAmp method), [1], [2]
(Dsolve method), [1], [2]
(EnzBase method), [1], [2]
(FuncBase method), [1], [2]
(Gsolve method), [1], [2]
(HHChannel method), [1], [2]
(HHChannel2D method), [1], [2]
(HSolve method), [1], [2]
(IntFire method), [1], [2]
(Interpol method), [1], [2]
(IzhikevichNrn method), [1], [2]
(Ksolve method), [1], [2]
(MarkovChannel method), [1], [2]
(MarkovGslSolver method), [1], [2]
(MarkovRateTable method), [1], [2]
(MarkovSolver method), [1], [2]
(MarkovSolverBase method), [1], [2]
(MathFunc method), [1], [2]
(MeshEntry method), [1], [2]
(MgBlock method), [1], [2]
(PIDController method), [1], [2]
(PoolBase method), [1], [2]
(PostMaster method), [1], [2]
(PulseGen method), [1], [2]
(RC method), [1], [2]
(ReacBase method), [1], [2]
(SpikeGen method), [1], [2]
(Stats method), [1], [2], [3], [4], [5]
(StimulusTable method), [1], [2]
(SynChan method), [1], [2]
(Table method), [1], [2]
(TimeTable method), [1], [2]
(VClamp method), [1], [2]
(ZombieCaConc method), [1], [2]
(ZombieHHChannel method), [1], [2]
(testSched method), [1], [2]
process0 (Clock attribute), [1], [2]
process1 (Clock attribute), [1], [2]
process2 (Clock attribute), [1], [2]
process3 (Clock attribute), [1], [2]
process4 (Clock attribute), [1], [2]
process5 (Clock attribute), [1], [2]
process6 (Clock attribute), [1], [2]
process7 (Clock attribute), [1], [2]
process8 (Clock attribute), [1], [2]
process9 (Clock attribute), [1], [2]
process_0 (DifShell attribute), [1], [2]
process_1 (DifShell attribute), [1], [2]
proximal (SymCompartment attribute), [1], [2]
proximalOnly, [1], [2]
proximalOut, [1], [2], [3], [4], [5]
psdList() (PsdMesh method), [1], [2]
psdListOut (NeuroMesh attribute), [1], [2]
PsdMesh (built-in class), [1], [2]
PulseGen (built-in class), [1], [2]

Q

Q (MarkovRateTable attribute), [1], [2]
(MarkovSolverBase attribute), [1], [2]
quit() (Shell method), [1], [2]

R

R (RC attribute), [1], [2]
r0 (CylMesh attribute), [1], [2]
r1 (CylMesh attribute), [1], [2]
Ra (CompartmentBase attribute), [1], [2]
randInject() (CompartmentBase method), [1], [2]
randomInit() (SteadyState method), [1], [2]
rank (SteadyState attribute), [1], [2]
ratio (CplxEnzBase attribute), [1], [2]
raxial (CompartmentBase attribute), [1], [2]
raxialCylinder(), [1], [2]
raxialOut (CompartmentBase attribute), [1], [2]
raxialSphere(), [1], [2], [3], [4], [5]
raxialSym(), [1], [2], [3], [4], [5], [6], [7], [8]
RC (built-in class), [1], [2]
Reac (built-in class), [1], [2]
reac (PoolBase attribute), [1], [2]
ReacBase (built-in class), [1], [2]
reacDest() (PoolBase method), [1], [2]
reaction(), [1], [2]
refractoryPeriod (IntFire attribute), [1], [2]
refractT (SpikeGen attribute), [1], [2]
reinit(), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14]
(Adaptor method), [1], [2]
(Arith method), [1], [2]
(BufPool method), [1], [2]
(CaConc method), [1], [2]
(Clock method), [1], [2]
(CompartmentBase method), [1], [2]
(DiffAmp method), [1], [2]
(Dsolve method), [1], [2]
(EnzBase method), [1], [2]
(FuncBase method), [1], [2]
(Gsolve method), [1], [2]
(HHChannel method), [1], [2]
(HHChannel2D method), [1], [2]
(HSolve method), [1], [2]
(IntFire method), [1], [2]
(Interpol method), [1], [2]
(IzhikevichNrn method), [1], [2]
(Ksolve method), [1], [2]
(MarkovChannel method), [1], [2]
(MarkovGslSolver method), [1], [2]
(MarkovRateTable method), [1], [2]
(MarkovSolver method), [1], [2]
(MarkovSolverBase method), [1], [2]
(MathFunc method), [1], [2]
(MeshEntry method), [1], [2]
(MgBlock method), [1], [2]
(PIDController method), [1], [2]
(PoolBase method), [1], [2]
(PostMaster method), [1], [2]
(PulseGen method), [1], [2]
(RC method), [1], [2]
(ReacBase method), [1], [2]
(SpikeGen method), [1], [2]
(Stats method), [1], [2], [3], [4], [5]
(StimulusTable method), [1], [2]
(SynChan method), [1], [2]
(Table method), [1], [2]
(TimeTable method), [1], [2]
(VClamp method), [1], [2]
(ZombieCaConc method), [1], [2]
(ZombieHHChannel method), [1], [2]
reinit0 (Clock attribute), [1], [2]
reinit1 (Clock attribute), [1], [2]
reinit2 (Clock attribute), [1], [2]
reinit3 (Clock attribute), [1], [2]
reinit4 (Clock attribute), [1], [2]
reinit5 (Clock attribute), [1], [2]
reinit6 (Clock attribute), [1], [2]
reinit7 (Clock attribute), [1], [2]
reinit8 (Clock attribute), [1], [2]
reinit9 (Clock attribute), [1], [2]
relativeAccuracy (MarkovGslSolver attribute), [1], [2]
remesh() (EnzBase method), [1], [2]
remeshOut (MeshEntry attribute), [1], [2]
remeshReacsOut (MeshEntry attribute), [1], [2]
requestField (Adaptor attribute), [1], [2]
requestInput (Adaptor attribute), [1], [2]
requestMolWt (PoolBase attribute), [1], [2]
requestOut (Table attribute), [1], [2]
resetStencil() (ChemCompt method), [1], [2]
resettle() (SteadyState method), [1], [2]
result (FuncBase attribute), [1], [2]
(MathFunc attribute), [1], [2]
Rm (CompartmentBase attribute), [1], [2]
RmByTau (IzhikevichNrn attribute), [1], [2]
rowStart (Stoich attribute), [1], [2]
runTime (Clock attribute), [1], [2]

S

saturation (DiffAmp attribute), [1], [2]
(PIDController attribute), [1], [2]
scale (Adaptor attribute), [1], [2]
(Nernst attribute), [1], [2]
sdev (Stats attribute), [1], [2]
secondDelay (PulseGen attribute), [1], [2]
secondLevel (PulseGen attribute), [1], [2]
secondWidth (PulseGen attribute), [1], [2]
seed (HSolve attribute), [1], [2]
(SparseMsg attribute), [1], [2]
sensed (PIDController attribute), [1], [2]
(VClamp attribute), [1], [2]
sensedIn() (PIDController method), [1], [2]
(VClamp method), [1], [2]
separateSpines (NeuroMesh attribute), [1], [2]
set1d() (MarkovRateTable method), [1], [2]
set2d() (MarkovRateTable method), [1], [2]
setA() (IzhikevichNrn method), [1], [2]
setAbs_refract() (SpikeGen method), [1], [2]
setAbsoluteAccuracy() (MarkovGslSolver method), [1], [2]
setAccommodating() (IzhikevichNrn method), [1], [2]
setAlpha() (HHGate method), [1], [2]
(IzhikevichNrn method), [1], [2]
setAlphaParms() (HHGate method), [1], [2]
setAlwaysDiffuse() (CubeMesh method), [1], [2]
setAnyValue() (Arith method), [1], [2]
setB() (CaConc method), [1], [2]
(IzhikevichNrn method), [1], [2]
(ZombieCaConc method), [1], [2]
setBaseLevel() (PulseGen method), [1], [2]
setBeta() (HHGate method), [1], [2]
(IzhikevichNrn method), [1], [2]
setBufferSize() (PostMaster method), [1], [2]
setBufferTime() (IntFire method), [1], [2]
(SynChanBase method), [1], [2]
setC() (IzhikevichNrn method), [1], [2]
(RC method), [1], [2]
setCa() (CaConc method), [1], [2]
(ZombieCaConc method), [1], [2]
setCa_base() (CaConc method), [1], [2]
(ZombieCaConc method), [1], [2]
setCaAdvance() (HSolve method), [1], [2]
setCaBasal() (CaConc method), [1], [2]
(ZombieCaConc method), [1], [2]
setCaDiv() (HSolve method), [1], [2]
setCaMax() (HSolve method), [1], [2]
setCaMin() (HSolve method), [1], [2]
setCeiling() (CaConc method), [1], [2]
(ZombieCaConc method), [1], [2]
setCell() (NeuroMesh method), [1], [2]
setCeq(), [1], [2]
setCin() (Nernst method), [1], [2]
setclock() (Shell method), [1], [2]
setCm() (CompartmentBase method), [1], [2]
setCMg() (MgBlock method), [1], [2]
setColor() (Annotator method), [1], [2]
setCommand() (PIDController method), [1], [2]
setCompartment() (Dsolve method), [1], [2]
(Ksolve method), [1], [2]
(Stoich method), [1], [2]
setConc() (PoolBase method), [1], [2]
setConcInit() (PoolBase method), [1], [2]
setConcK1() (CplxEnzBase method), [1], [2]
setconst() (MarkovRateTable method), [1], [2]
setConvergenceCriterion() (SteadyState method), [1], [2]
setCoords() (CubeMesh method), [1], [2]
(CylMesh method), [1], [2]
setCount() (PulseGen method), [1], [2]
setCout() (Nernst method), [1], [2]
setD(), [1], [2]
(IzhikevichNrn method), [1], [2]
setDelay() (PulseGen method), [1], [2]
(Synapse method), [1], [2]
setDiameter(), [1], [2]
(CompartmentBase method), [1], [2]
setDiffConst() (PoolBase method), [1], [2]
setDiffLength() (CylMesh method), [1], [2]
(NeuroMesh method), [1], [2]
setDivs() (HHGate method), [1], [2]
setDoLoop() (StimulusTable method), [1], [2]
setDsolve() (Ksolve method), [1], [2]
(Stoich method), [1], [2]
setDt() (Clock method), [1], [2]
(HSolve method), [1], [2]
setDx() (CubeMesh method), [1], [2]
(Interpol2D method), [1], [2]
setDy() (CubeMesh method), [1], [2]
(Interpol2D method), [1], [2]
setDz() (CubeMesh method), [1], [2]
setEdgeTriggered() (SpikeGen method), [1], [2]
setEk() (ChanBase method), [1], [2]
(SynChanBase method), [1], [2]
(ZombieHHChannel method), [1], [2]
setEm() (CompartmentBase method), [1], [2]
setEntry() (SparseMsg method), [1], [2]
setEpsAbs() (Ksolve method), [1], [2]
setEpsRel() (Ksolve method), [1], [2]
setExpr() (Func method), [1], [2]
setFilename() (TimeTable method), [1], [2]
setFirstDelay() (PulseGen method), [1], [2]
setFirstLevel() (PulseGen method), [1], [2]
setFirstWidth() (PulseGen method), [1], [2]
setFloor() (CaConc method), [1], [2]
(ZombieCaConc method), [1], [2]
setFunction() (Arith method), [1], [2]
(MathFunc method), [1], [2]
setGain() (DiffAmp method), [1], [2]
(PIDController method), [1], [2]
(VClamp method), [1], [2]
setGamma() (IzhikevichNrn method), [1], [2]
setGbar() (ChanBase method), [1], [2]
(MarkovChannel method), [1], [2]
(SynChanBase method), [1], [2]
(ZombieHHChannel method), [1], [2]
setGeometryPolicy() (NeuroMesh method), [1], [2]
setGk(), [1], [2]
(ChanBase method), [1], [2]
(SynChanBase method), [1], [2]
(ZombieHHChannel method), [1], [2]
setI1() (OneToAllMsg method), [1], [2]
(SingleMsg method), [1], [2]
setI2() (SingleMsg method), [1], [2]
setIcon() (Annotator method), [1], [2]
setIk() (MgBlock method), [1], [2]
setInitialState() (MarkovChannel method), [1], [2]
(MarkovSolverBase method), [1], [2]
setInitU() (IzhikevichNrn method), [1], [2]
setInitVm() (CompartmentBase method), [1], [2]
(IzhikevichNrn method), [1], [2]
setInject() (CompartmentBase method), [1], [2]
(IzhikevichNrn method), [1], [2]
(RC method), [1], [2]
setInnerArea(), [1], [2]
setInputOffset() (Adaptor method), [1], [2]
setInstant() (HHChannel method), [1], [2]
(HHChannel2D method), [1], [2]
(ZombieHHChannel method), [1], [2]
setInternalDt() (MarkovGslSolver method), [1], [2]
setIsToroid() (CubeMesh method), [1], [2]
setK1() (CplxEnzBase method), [1], [2]
setK2() (CplxEnzBase method), [1], [2]
setK3() (CplxEnzBase method), [1], [2]
setKb() (ReacBase method), [1], [2]
setKcat() (EnzBase method), [1], [2]
setKf() (ReacBase method), [1], [2]
setKm() (EnzBase method), [1], [2]
setKMg_A() (MgBlock method), [1], [2]
setKMg_B() (MgBlock method), [1], [2]
setKsolve() (Stoich method), [1], [2]
setLabels() (MarkovChannel method), [1], [2]
setLeak(), [1], [2]
setLength(), [1], [2]
(CompartmentBase method), [1], [2]
setLevel() (PulseGen method), [1], [2]
setLigandConc() (MarkovChannel method), [1], [2]
(MarkovRateTable method), [1], [2]
setLoopTime() (StimulusTable method), [1], [2]
setMathML() (MathFunc method), [1], [2]
setMax() (HHGate method), [1], [2]
setMaxIter() (SteadyState method), [1], [2]
setMeshToSpace() (CubeMesh method), [1], [2]
setMethod() (Ksolve method), [1], [2]
(MarkovGslSolver method), [1], [2]
(TimeTable method), [1], [2]
setMin() (HHGate method), [1], [2]
setMInfinity() (HHGate method), [1], [2]
setMode() (Func method), [1], [2]
(VClamp method), [1], [2]
setMolWt() (Species method), [1], [2]
setMotorConst() (PoolBase method), [1], [2]
setN() (PoolBase method), [1], [2]
setName() (Neutral method), [1], [2]
setNInit() (PoolBase method), [1], [2]
setNormalizeWeights() (SynChan method), [1], [2]
setNotes() (Annotator method), [1], [2]
setNumAllVoxels() (Gsolve method), [1], [2]
(Ksolve method), [1], [2]
setNumData() (Neutral method), [1], [2]
setNumField() (Neutral method), [1], [2]
setNumGateX() (HHChannel method), [1], [2]
(HHChannel2D method), [1], [2]
(ZombieHHChannel method), [1], [2]
setNumGateY() (HHChannel method), [1], [2]
(HHChannel2D method), [1], [2]
(ZombieHHChannel method), [1], [2]
setNumGateZ() (HHChannel method), [1], [2]
(HHChannel2D method), [1], [2]
(ZombieHHChannel method), [1], [2]
setNumKb() (ReacBase method), [1], [2]
setNumKf() (ReacBase method), [1], [2]
setNumKm() (EnzBase method), [1], [2]
setNumMesh() (ChemCompt method), [1], [2]
setNumOpenStates() (MarkovChannel method), [1], [2]
setNumPools() (Dsolve method), [1], [2]
(Gsolve method), [1], [2]
(Ksolve method), [1], [2]
setNumStates() (MarkovChannel method), [1], [2]
setNumSynapse() (SynHandler method), [1], [2]
setNumSynapses() (SynHandler method), [1], [2]
setNVec() (Dsolve method), [1], [2]
(Gsolve method), [1], [2]
(Ksolve method), [1], [2]
setNx() (CubeMesh method), [1], [2]
setNy() (CubeMesh method), [1], [2]
setNz() (CubeMesh method), [1], [2]
setOuterArea(), [1], [2]
setOutputOffset() (Adaptor method), [1], [2]
setOutputValue() (Arith method), [1], [2]
setPath() (Dsolve method), [1], [2]
(Stoich method), [1], [2]
setPreserveNumEntries() (CubeMesh method), [1], [2]
setProbability() (SparseMsg method), [1], [2]
setR() (RC method), [1], [2]
setR0() (CylMesh method), [1], [2]
setR1() (CylMesh method), [1], [2]
setRa() (CompartmentBase method), [1], [2]
setRandomConnectivity() (SparseMsg method), [1], [2]
setRatio() (CplxEnzBase method), [1], [2]
setRefractoryPeriod() (IntFire method), [1], [2]
setRefractT() (SpikeGen method), [1], [2]
setRelativeAccuracy() (MarkovGslSolver method), [1], [2]
setRm() (CompartmentBase method), [1], [2]
setRmByTau() (IzhikevichNrn method), [1], [2]
setSaturation() (DiffAmp method), [1], [2]
(PIDController method), [1], [2]
setScale() (Adaptor method), [1], [2]
(Nernst method), [1], [2]
setSecondDelay() (PulseGen method), [1], [2]
setSecondLevel() (PulseGen method), [1], [2]
setSecondWidth() (PulseGen method), [1], [2]
setSeed() (HSolve method), [1], [2]
(SparseMsg method), [1], [2]
setSeparateSpines() (NeuroMesh method), [1], [2]
setShapeMode(), [1], [2]
setSpaceToMesh() (CubeMesh method), [1], [2]
setSpeciesId() (PoolBase method), [1], [2]
setStartTime() (StimulusTable method), [1], [2]
setStepPosition() (StimulusTable method), [1], [2]
setStepSize() (StimulusTable method), [1], [2]
setStoich() (Dsolve method), [1], [2]
(Gsolve method), [1], [2]
(Ksolve method), [1], [2]
(SteadyState method), [1], [2]
setStopTime() (StimulusTable method), [1], [2]
setStride() (DiagonalMsg method), [1], [2]
setSubTree() (NeuroMesh method), [1], [2]
setSurface() (CubeMesh method), [1], [2]
setTable() (Interpol2D method), [1], [2]
(VectorTable method), [1], [2]
setTableA() (HHGate method), [1], [2]
(HHGate2D method), [1], [2]
setTableB() (HHGate method), [1], [2]
(HHGate2D method), [1], [2]
setTableVector2D() (Interpol2D method), [1], [2]
setTarget() (HSolve method), [1], [2]
setTau() (CaConc method), [1], [2]
(HHGate method), [1], [2]
(IntFire method), [1], [2]
(VClamp method), [1], [2]
(ZombieCaConc method), [1], [2]
setTau1() (SynChan method), [1], [2]
setTau2() (SynChan method), [1], [2]
setTauD() (PIDController method), [1], [2]
setTauI() (PIDController method), [1], [2]
setTd() (VClamp method), [1], [2]
setTemperature() (Nernst method), [1], [2]
setTextColor() (Annotator method), [1], [2]
setThick() (CaConc method), [1], [2]
(ZombieCaConc method), [1], [2]
setThickness(), [1], [2]
(PsdMesh method), [1], [2]
setThis() (Mstring method), [1], [2]
(Neutral method), [1], [2]
setThresh() (IntFire method), [1], [2]
setThreshold() (SpikeGen method), [1], [2]
(Table method), [1], [2]
setTi() (VClamp method), [1], [2]
setTickDt() (Clock method), [1], [2]
setTickStep() (Clock method), [1], [2]
settle() (SteadyState method), [1], [2]
setTotal() (SteadyState method), [1], [2]
setTrigMode() (PulseGen method), [1], [2]
setU0() (IzhikevichNrn method), [1], [2]
setupAlpha() (HHGate method), [1], [2]
setupGate() (HHGate method), [1], [2]
setupMatrix() (SteadyState method), [1], [2]
setupTau() (HHGate method), [1], [2]
setUseConcentration() (HHChannel method), [1], [2]
(ZombieHHChannel method), [1], [2]
setUseInterpolation() (HHGate method), [1], [2]
setUseRandInit() (Gsolve method), [1], [2]
setV0() (RC method), [1], [2]
setValence(), [1], [2]
(Nernst method), [1], [2]
setValue() (Double method), [1], [2]
(Long method), [1], [2]
(Mstring method), [1], [2]
(Unsigned method), [1], [2]
setVar() (Func method), [1], [2]
setVDiv() (HSolve method), [1], [2]
setVector() (TableBase method), [1], [2]
setVm() (CompartmentBase method), [1], [2]
(IntFire method), [1], [2]
(IzhikevichNrn method), [1], [2]
(MarkovChannel method), [1], [2]
(MarkovRateTable method), [1], [2]
setVMax() (HSolve method), [1], [2]
setVmax() (IzhikevichNrn method), [1], [2]
setVMin() (HSolve method), [1], [2]
setVolume(), [1], [2]
(ChemCompt method), [1], [2]
(PoolBase method), [1], [2]
setVolumeNotRates() (ChemCompt method), [1], [2]
setWeight() (Synapse method), [1], [2]
setWidth() (PulseGen method), [1], [2]
setX() (Annotator method), [1], [2]
(CompartmentBase method), [1], [2]
(Func method), [1], [2]
(HHChannel method), [1], [2]
(HHChannel2D method), [1], [2]
(ZombieHHChannel method), [1], [2]
setX0() (CompartmentBase method), [1], [2]
(CubeMesh method), [1], [2]
(CylMesh method), [1], [2]
setX1() (CubeMesh method), [1], [2]
(CylMesh method), [1], [2]
setXdivs() (Interpol2D method), [1], [2]
(MarkovSolverBase method), [1], [2]
(VectorTable method), [1], [2]
setXdivsA() (HHGate2D method), [1], [2]
setXdivsB() (HHGate2D method), [1], [2]
setXindex() (HHChannel2D method), [1], [2]
setXmax() (Interpol method), [1], [2]
(Interpol2D method), [1], [2]
(MarkovSolverBase method), [1], [2]
(VectorTable method), [1], [2]
setXmaxA() (HHGate2D method), [1], [2]
setXmaxB() (HHGate2D method), [1], [2]
setXmin() (Interpol method), [1], [2]
(Interpol2D method), [1], [2]
(MarkovSolverBase method), [1], [2]
(VectorTable method), [1], [2]
setXminA() (HHGate2D method), [1], [2]
setXminB() (HHGate2D method), [1], [2]
setXpower() (HHChannel method), [1], [2]
(HHChannel2D method), [1], [2]
(ZombieHHChannel method), [1], [2]
setY() (Annotator method), [1], [2]
(CompartmentBase method), [1], [2]
(Func method), [1], [2]
(HHChannel method), [1], [2]
(HHChannel2D method), [1], [2]
(ZombieHHChannel method), [1], [2]
setY0() (CompartmentBase method), [1], [2]
(CubeMesh method), [1], [2]
(CylMesh method), [1], [2]
setY1() (CubeMesh method), [1], [2]
(CylMesh method), [1], [2]
setYdivs() (Interpol2D method), [1], [2]
(MarkovSolverBase method), [1], [2]
setYdivsA() (HHGate2D method), [1], [2]
setYdivsB() (HHGate2D method), [1], [2]
setYindex() (HHChannel2D method), [1], [2]
setYmax() (Interpol2D method), [1], [2]
(MarkovSolverBase method), [1], [2]
setYmaxA() (HHGate2D method), [1], [2]
setYmaxB() (HHGate2D method), [1], [2]
setYmin() (Interpol2D method), [1], [2]
(MarkovSolverBase method), [1], [2]
setYminA() (HHGate2D method), [1], [2]
setYminB() (HHGate2D method), [1], [2]
setYpower() (HHChannel method), [1], [2]
(HHChannel2D method), [1], [2]
(ZombieHHChannel method), [1], [2]
setZ() (Annotator method), [1], [2]
(CompartmentBase method), [1], [2]
(Func method), [1], [2]
(HHChannel method), [1], [2]
(HHChannel2D method), [1], [2]
(ZombieHHChannel method), [1], [2]
setZ0() (CompartmentBase method), [1], [2]
(CubeMesh method), [1], [2]
(CylMesh method), [1], [2]
setZ1() (CubeMesh method), [1], [2]
(CylMesh method), [1], [2]
setZindex() (HHChannel2D method), [1], [2]
setZk() (MgBlock method), [1], [2]
setZpower() (HHChannel method), [1], [2]
(HHChannel2D method), [1], [2]
(ZombieHHChannel method), [1], [2]
shapeMode, [1], [2]
Shell (built-in class), [1], [2]
showMatrices() (SteadyState method), [1], [2]
sibling, [1], [2]
SingleMsg (built-in class), [1], [2]
size (MarkovRateTable attribute), [1], [2]
(TableBase attribute), [1], [2]
solutionStatus (SteadyState attribute), [1], [2]
sourceFields (Neutral attribute), [1], [2]
spaceToMesh (CubeMesh attribute), [1], [2]
SparseMsg (built-in class), [1], [2]
Species (built-in class), [1], [2]
species (PoolBase attribute), [1], [2]
speciesId (PoolBase attribute), [1], [2]
sphere, [1], [2]
spike() (Table method), [1], [2]
SpikeGen (built-in class), [1], [2]
spikeOut (IntFire attribute), [1], [2]
(IzhikevichNrn attribute), [1], [2]
(SpikeGen attribute), [1], [2]
spineList() (SpineMesh method), [1], [2]
spineListOut (NeuroMesh attribute), [1], [2]
SpineMesh (built-in class), [1], [2]
src (Finfo attribute), [1], [2]
srcFieldsOnE1 (Msg attribute), [1], [2]
srcFieldsOnE2 (Msg attribute), [1], [2]
start() (Clock method), [1], [2]
startTime (StimulusTable attribute), [1], [2]
state, [1], [2]
(MarkovChannel attribute), [1], [2]
(MarkovSolverBase attribute), [1], [2]
(RC attribute), [1], [2]
stateOut (MarkovGslSolver attribute), [1], [2]
(MarkovSolverBase attribute), [1], [2]
stateType (SteadyState attribute), [1], [2]
Stats (built-in class), [1], [2]
status (SteadyState attribute), [1], [2]
SteadyState (built-in class), [1], [2]
stencilIndex (ChemCompt attribute), [1], [2]
stencilRate (ChemCompt attribute), [1], [2]
step() (Clock method), [1], [2]
stepPosition (StimulusTable attribute), [1], [2]
stepSize (StimulusTable attribute), [1], [2]
StimulusTable (built-in class), [1], [2]
Stoich (built-in class), [1], [2]
stoich (Dsolve attribute), [1], [2]
(Gsolve attribute), [1], [2]
(Ksolve attribute), [1], [2]
(SteadyState attribute), [1], [2]
stop() (Clock method), [1], [2]
stopTime (StimulusTable attribute), [1], [2]
storeInflux(), [1], [2]
storeOutflux(), [1], [2]
stride (DiagonalMsg attribute), [1], [2]
sub (EnzBase attribute), [1], [2]
(ReacBase attribute), [1], [2]
subDest() (EnzBase method), [1], [2]
(ReacBase method), [1], [2]
subOut (EnzBase attribute), [1], [2]
(ReacBase attribute), [1], [2]
subTree (NeuroMesh attribute), [1], [2]
sum (Stats attribute), [1], [2]
SumFunc (built-in class), [1], [2]
sumRaxial(), [1], [2], [3], [4], [5], [6], [7], [8]
sumRaxialOut, [1], [2], [3], [4], [5], [6], [7], [8]
surface (CubeMesh attribute), [1], [2]
SymCompartment (built-in class), [1], [2]
Synapse (built-in class), [1], [2]
SynChan (built-in class), [1], [2]
SynChanBase (built-in class), [1], [2]
SynHandler (built-in class), [1], [2]

T

Table (built-in class), [1], [2]
table (Interpol2D attribute), [1], [2]
(VectorTable attribute), [1], [2]
tableA (HHGate attribute), [1], [2]
(HHGate2D attribute), [1], [2]
tableB (HHGate attribute), [1], [2]
(HHGate2D attribute), [1], [2]
TableBase (built-in class), [1], [2]
tableVector2D (Interpol2D attribute), [1], [2]
target (HSolve attribute), [1], [2]
tau, [1], [2]
(CaConc attribute), [1], [2]
(HHGate attribute), [1], [2]
(IntFire attribute), [1], [2]
(ZombieCaConc attribute), [1], [2]
tau1 (SynChan attribute), [1], [2]
tau2 (SynChan attribute), [1], [2]
tauD (PIDController attribute), [1], [2]
tauI (PIDController attribute), [1], [2]
tauPump(), [1], [2]
td, [1], [2]
Temperature (Nernst attribute), [1], [2]
testSched (built-in class), [1], [2]
textColor (Annotator attribute), [1], [2]
thick (CaConc attribute), [1], [2]
(ZombieCaConc attribute), [1], [2]
thickness, [1], [2]
(PsdMesh attribute), [1], [2]
this (Mstring attribute), [1], [2]
(Neutral attribute), [1], [2]
thresh (IntFire attribute), [1], [2]
threshold (SpikeGen attribute), [1], [2]
(Table attribute), [1], [2]
ti, [1], [2]
tickDt (Clock attribute), [1], [2]
tickStep (Clock attribute), [1], [2]
TimeTable (built-in class), [1], [2]
total (SteadyState attribute), [1], [2]
totLength (CylMesh attribute), [1], [2]
transpose() (SparseMsg method), [1], [2]
trigMode (PulseGen attribute), [1], [2]
tripletFill() (SparseMsg method), [1], [2]
tweakAlpha() (HHGate method), [1], [2]
tweakTau() (HHGate method), [1], [2]
type (Finfo attribute), [1], [2]

U

u (IzhikevichNrn attribute), [1], [2]
u0 (IzhikevichNrn attribute), [1], [2]
unsetEntry() (SparseMsg method), [1], [2]
Unsigned (built-in class), [1], [2]
unzombify() (Stoich method), [1], [2]
useClock() (Shell method), [1], [2]
useConcentration (HHChannel attribute), [1], [2]
(ZombieHHChannel attribute), [1], [2]
useInterpolation (HHGate attribute), [1], [2]
useRandInit (Gsolve attribute), [1], [2]

V

V0 (RC attribute), [1], [2]
valence, [1], [2]
(Nernst attribute), [1], [2]
value, [1], [2]
(Double attribute), [1], [2]
(Long attribute), [1], [2]
(Mstring attribute), [1], [2]
(Unsigned attribute), [1], [2]
valueFields (Neutral attribute), [1], [2]
valueOut, [1], [2]
var, [1], [2]
varIn() (Func method), [1], [2]
vars, [1], [2]
VClamp (built-in class), [1], [2]
vDiv (HSolve attribute), [1], [2]
vector (TableBase attribute), [1], [2]
VectorTable (built-in class), [1], [2]
Vm (CompartmentBase attribute), [1], [2]
(IntFire attribute), [1], [2]
(IzhikevichNrn attribute), [1], [2]
(MarkovChannel attribute), [1], [2]
(MarkovRateTable attribute), [1], [2]
Vm() (ChanBase method), [1], [2], [3], [4], [5]
(SpikeGen method), [1], [2]
(SynChanBase method), [1], [2], [3], [4], [5]
Vm1(), [1], [2]
Vm2(), [1], [2]
vMax (HSolve attribute), [1], [2]
Vmax (IzhikevichNrn attribute), [1], [2]
vMin (HSolve attribute), [1], [2]
VmOut (CompartmentBase attribute), [1], [2]
(IzhikevichNrn attribute), [1], [2], [3], [4], [5]
volume, [1], [2]
(ChemCompt attribute), [1], [2]
(MeshEntry attribute), [1], [2]
(PoolBase attribute), [1], [2]
voxelVolume (ChemCompt attribute), [1], [2]

W

weight (Synapse attribute), [1], [2]
width (PulseGen attribute), [1], [2]
widthIn() (PulseGen method), [1], [2]

X

x, [1], [2]
(Annotator attribute), [1], [2]
(CompartmentBase attribute), [1], [2]
X (HHChannel attribute), [1], [2]
(HHChannel2D attribute), [1], [2]
(ZombieHHChannel attribute), [1], [2]
x0 (CompartmentBase attribute), [1], [2]
(CubeMesh attribute), [1], [2]
(CylMesh attribute), [1], [2]
x1 (CubeMesh attribute), [1], [2]
(CylMesh attribute), [1], [2]
xdivs (Interpol2D attribute), [1], [2]
(MarkovSolverBase attribute), [1], [2]
(VectorTable attribute), [1], [2]
xdivsA (HHGate2D attribute), [1], [2]
xdivsB (HHGate2D attribute), [1], [2]
xIn() (Func method), [1], [2]
Xindex (HHChannel2D attribute), [1], [2]
xmax (Interpol attribute), [1], [2]
(Interpol2D attribute), [1], [2]
(MarkovSolverBase attribute), [1], [2]
(VectorTable attribute), [1], [2]
xmaxA (HHGate2D attribute), [1], [2]
xmaxB (HHGate2D attribute), [1], [2]
xmin (Interpol attribute), [1], [2]
(Interpol2D attribute), [1], [2]
(MarkovSolverBase attribute), [1], [2]
(VectorTable attribute), [1], [2]
xminA (HHGate2D attribute), [1], [2]
xminB (HHGate2D attribute), [1], [2]
xplot() (TableBase method), [1], [2]
Xpower (HHChannel attribute), [1], [2]
(HHChannel2D attribute), [1], [2]
(ZombieHHChannel attribute), [1], [2]
xyIn(), [1], [2]
xyzIn(), [1], [2]

Y

y, [1], [2]
(Annotator attribute), [1], [2]
(CompartmentBase attribute), [1], [2]
Y (HHChannel attribute), [1], [2]
(HHChannel2D attribute), [1], [2]
y (Interpol attribute), [1], [2]
(TableBase attribute), [1], [2]
Y (ZombieHHChannel attribute), [1], [2]
y0 (CompartmentBase attribute), [1], [2]
(CubeMesh attribute), [1], [2]
(CylMesh attribute), [1], [2]
y1 (CubeMesh attribute), [1], [2]
(CylMesh attribute), [1], [2]
ydivs (Interpol2D attribute), [1], [2]
(MarkovSolverBase attribute), [1], [2]
ydivsA (HHGate2D attribute), [1], [2]
ydivsB (HHGate2D attribute), [1], [2]
yIn(), [1], [2]
Yindex (HHChannel2D attribute), [1], [2]
ymax (Interpol2D attribute), [1], [2]
(MarkovSolverBase attribute), [1], [2]
ymaxA (HHGate2D attribute), [1], [2]
ymaxB (HHGate2D attribute), [1], [2]
ymin (Interpol2D attribute), [1], [2]
(MarkovSolverBase attribute), [1], [2]
yminA (HHGate2D attribute), [1], [2]
yminB (HHGate2D attribute), [1], [2]
Ypower (HHChannel attribute), [1], [2]
(HHChannel2D attribute), [1], [2]
(ZombieHHChannel attribute), [1], [2]

Z

z, [1], [2]
(Annotator attribute), [1], [2]
(CompartmentBase attribute), [1], [2]
Z (HHChannel attribute), [1], [2]
(HHChannel2D attribute), [1], [2]
z (Interpol2D attribute), [1], [2]
Z (ZombieHHChannel attribute), [1], [2]
z0 (CompartmentBase attribute), [1], [2]
(CubeMesh attribute), [1], [2]
(CylMesh attribute), [1], [2]
z1 (CubeMesh attribute), [1], [2]
(CylMesh attribute), [1], [2]
zIn(), [1], [2]
Zindex (HHChannel2D attribute), [1], [2]
Zk (MgBlock attribute), [1], [2]
ZombieBufPool (built-in class), [1], [2]
ZombieCaConc (built-in class), [1], [2]
ZombieCompartment (built-in class), [1], [2]
ZombieEnz (built-in class), [1], [2]
ZombieFuncPool (built-in class), [1], [2]
ZombieHHChannel (built-in class), [1], [2]
ZombieMMenz (built-in class), [1], [2]
ZombiePool (built-in class), [1], [2]
ZombieReac (built-in class), [1], [2]
Zpower (HHChannel attribute), [1], [2]
(HHChannel2D attribute), [1], [2]
(ZombieHHChannel attribute), [1], [2]